Documentation
Data sources
Genome sequences
| Organism | Genomes | Sources and releases | Number of sequences |
|---|---|---|---|
| Oryza sativa | ORYSA_IR8_v1.0 | v1.0 (Stein et al, 2018) |
35495 |
| Oryza sativa | ORYSA_Kitaake_v3.1 | v3.1 |
35594 |
| Oryza sativa | ORYSA_MH63_v1.0 | v1.0 (Zhang et al, 2017) |
60123 |
| Oryza sativa | ORYSA_N22_v1.0 | v1.0 (Stein et al, 2018) |
36140 |
| Oryza sativa | ORYSA_Nipponbare_v7.0 | v7.0 (Goff et al, 2002) |
55986 |
| Oryza sativa | ORYSA_R498_IGDB_v3.0 | v3.0 (Du et al, 2017) |
37549 |
| Oryza sativa | ORYSA_ZS97_v1.0 | v1.0 (Zhang et al, 2017) |
60897 |
| Oryza sativa | GreenPhyl Pangenome | n/a | 55093 |
| Arabidopsis thaliana | ARATH_Araport11 | vAraport11 (AGI, 2000) |
27655 |
| Medicago truncatula | MEDTR_A17_r5.0 | v5.0 (Pecrix et al, 2018) |
44623 |
| Medicago truncatula | MEDTR_Mt4.0v2 | v4.0.2 (Tang et al, 2014) |
50444 |
| Medicago truncatula | GreenPhyl Pangenome | n/a | 41406 |
| Sorghum bicolor | SORBI_BTx623_v3.1.1 | v3.1.1 (McCormick RF, 2017) |
34129 |
| Sorghum bicolor | SORBI_Tx430_v1.0 | v1.0 (Deschamp et al, 2018) |
36110 |
| Sorghum bicolor | GreenPhyl Pangenome | n/a | 31282 |
| Vitis vinifera | VITVI_12X.2 | v2.0 (Canaguier et al, 2017) |
41733 |
| Vitis vinifera | VITVI_CabernetSauvignon_v1.0 | v1.0 (Minio et al, 2018) |
96331 |
| Vitis vinifera | VITVI_Carmenere_v1.0 | v1.0 (Minio et al, 2019) |
73109 |
| Vitis vinifera | GreenPhyl Pangenome | n/a | 44202 |
| Brachypodium distachyon | BRADI_ABR2_337_v1.ABR2 | v1.ABR2 (Gordon et al, 2026) |
46637 |
| Brachypodium distachyon | BRADI_ABR3_343_v1.ABR3 | v1.ABR3 (Gordon et al, 2034) |
46370 |
| Brachypodium distachyon | BRADI_ABR4_364_v1.ABR4 | v1.ABR4 (Gordon et al, 2030) |
46109 |
| Brachypodium distachyon | BRADI_ABR5_379_v1.ABR5 | v1.ABR5 (Gordon et al, 2046) |
46591 |
| Brachypodium distachyon | BRADI_ABR6_336_v1.ABR6_r | v1.ABR6_r (Gordon et al, 2021) |
46043 |
| Brachypodium distachyon | BRADI_ABR7_369_v1.ABR7 | v1.ABR7 (Gordon et al, 2020) |
46293 |
| Brachypodium distachyon | BRADI_ABR8_356_v1.ABR8 | v1.ABR8 (Gordon et al, 2065) |
44257 |
| Brachypodium distachyon | BRADI_ABR9_333_v1.ABR9_r | v1.ABR9_r (Gordon et al, 2029) |
35015 |
| Brachypodium distachyon | BRADI_Adi_10_381_v1.Adi-10 | v1.Adi-10 (Gordon et al, 2067) |
41786 |
| Brachypodium distachyon | BRADI_Adi_12_359_v1.Adi-12 | v1.Adi-12 (Gordon et al, 2055) |
45370 |
| Brachypodium distachyon | BRADI_Adi_2_372_v1.Adi-2 | v1.Adi-2 (Gordon et al, 2023) |
46560 |
| Brachypodium distachyon | BRADI_Arn1_355_v1.Arn1 | v1.Arn1 (Gordon et al, 2024) |
45851 |
| Brachypodium distachyon | BRADI_Bd18_1_362_v1.Bd18-1 | v1.Bd18-1 (Gordon et al, 2019) |
46621 |
| Brachypodium distachyon | BRADI_Bd1_1_349_v1.Bd1-1 | v1.Bd1-1 (Gordon et al, 2053) |
42227 |
| Brachypodium distachyon | BRADI_Bd21_3_378_v1.Bd21-3_r | v1.Bd21-3_r (Gordon et al, 2045) |
44011 |
| Brachypodium distachyon | BRADI_Bd21v2_1_283_Bd21v2 | v2.0 (Gordon et al, 2017) |
42868 |
| Brachypodium distachyon | BRADI_Bd29_1_346_v1.Bd29-1 | v1.Bd29-1 (Gordon et al, 2064) |
44278 |
| Brachypodium distachyon | BRADI_Bd2_3_353_v1.Bd2-3 | v1.Bd2-3 (Gordon et al, 2057) |
45459 |
| Brachypodium distachyon | BRADI_Bd30_1_344_v1.Bd30-1 | v1.Bd30-1 (Gordon et al, 2048) |
42026 |
| Brachypodium distachyon | BRADI_Bd3_1_328_v1.Bd3-1_r | v1.Bd3-1_r (Gordon et al, 2066) |
37234 |
| Brachypodium distachyon | BRADI_BdTR10c_374_v1.BdTR10C | v1.BdTR10C (Gordon et al, 2062) |
44299 |
| Brachypodium distachyon | BRADI_BdTR11a_380_v1.BdTR11A | v1.BdTR11A (Gordon et al, 2056) |
49561 |
| Brachypodium distachyon | BRADI_BdTR11g_357_v1.BdTR11G | v1.BdTR11G (Gordon et al, 2035) |
46726 |
| Brachypodium distachyon | BRADI_BdTR11i_363_v1.BdTR11I | v1.BdTR11I (Gordon et al, 2043) |
46207 |
| Brachypodium distachyon | BRADI_BdTR12c_352_v1.BdTR12c | v1.BdTR12c (Gordon et al, 2058) |
44583 |
| Brachypodium distachyon | BRADI_BdTR13a_334_v1.BdTR13a | v1.BdTR13a (Gordon et al, 2025) |
47194 |
| Brachypodium distachyon | BRADI_BdTR13c_365_v1.BdTR13C | v1.BdTR13C (Gordon et al, 2059) |
45083 |
| Brachypodium distachyon | BRADI_BdTR1i_345_v1.BdTR1i | v1.BdTR1i (Gordon et al, 2027) |
46722 |
| Brachypodium distachyon | BRADI_BdTR2b_376_v1.BdTR2B | v1.BdTR2B (Gordon et al, 2050) |
45974 |
| Brachypodium distachyon | BRADI_BdTR2g_367_v1.BdTR2G | v1.BdTR2G (Gordon et al, 2060) |
45130 |
| Brachypodium distachyon | BRADI_BdTR3c_354_v1.BdTR3C | v1.BdTR3C (Gordon et al, 2018) |
43389 |
| Brachypodium distachyon | BRADI_BdTR5i_370_v1.BdTR5I | v1.BdTR5I (Gordon et al, 2063) |
44350 |
| Brachypodium distachyon | BRADI_BdTR7a_329_v1.BdTR7a | v1.BdTR7a (Gordon et al, 2047) |
45440 |
| Brachypodium distachyon | BRADI_BdTR8i_348_v1.BdTR8i | v1.BdTR8i (Gordon et al, 2037) |
44427 |
| Brachypodium distachyon | BRADI_BdTR9k_358_v1.BdTR9K | v1.BdTR9K (Gordon et al, 2061) |
44670 |
| Brachypodium distachyon | BRADI_Bis_1_338_v1.Bis-1 | v1.Bis-1 (Gordon et al, 2044) |
45734 |
| Brachypodium distachyon | BRADI_Foz1_366_v1.Foz1 | v1.Foz1 (Gordon et al, 2042) |
46457 |
| Brachypodium distachyon | BRADI_Gaz_8_339_v1.Gaz-8 | v1.Gaz-8 (Gordon et al, 2069) |
36875 |
| Brachypodium distachyon | BRADI_Jer1_375_v1.Jer1 | v1.Jer1 (Gordon et al, 2049) |
46047 |
| Brachypodium distachyon | BRADI_Kah_1_351_v1.Kah-1 | v1.Kah-1 (Gordon et al, 2068) |
44606 |
| Brachypodium distachyon | BRADI_Kah_5_342_v1.Kah-5 | v1.Kah-5 (Gordon et al, 2036) |
46744 |
| Brachypodium distachyon | BRADI_Koz_1_330_v1.Koz-1 | v1.Koz-1 (Gordon et al, 2028) |
46872 |
| Brachypodium distachyon | BRADI_Koz_3_368_v1.Koz-3 | v1.Koz-3 (Gordon et al, 2051) |
41884 |
| Brachypodium distachyon | BRADI_Luc1_347_v1.Luc1 | v1.Luc1 (Gordon et al, 2022) |
46198 |
| Brachypodium distachyon | BRADI_Mig3_377_v1.Mig3 | v1.Mig3 (Gordon et al, 2039) |
46077 |
| Brachypodium distachyon | BRADI_Mon3_350_v1.Mon3 | v1.Mon3 (Gordon et al, 2033) |
44757 |
| Brachypodium distachyon | BRADI_Mur1_373_v1.Mur1 | v1.Mur1 (Gordon et al, 2054) |
45912 |
| Brachypodium distachyon | BRADI_Per1_326_v1.Per1 | v1.Per1 (Gordon et al, 2031) |
46229 |
| Brachypodium distachyon | BRADI_Ron2_360_v1.RON2 | v1.RON2 (Gordon et al, 2032) |
46068 |
| Brachypodium distachyon | BRADI_S8iiC_340_v1.S8iiC | v1.S8iiC (Gordon et al, 2040) |
46088 |
| Brachypodium distachyon | BRADI_Sig2_371_v1.Sig2 | v1.Sig2 (Gordon et al, 2041) |
46526 |
| Brachypodium distachyon | BRADI_Tek_2_341_v1.Tek-2 | v1.Tek-2 (Gordon et al, 2052) |
44903 |
| Brachypodium distachyon | BRADI_Tek_4_332_v1.Tek-4 | v1.Tek-4 (Gordon et al, 2070) |
43220 |
| Brachypodium distachyon | BRADI_Uni2_327_v1.Uni2 | v1.Uni2 (Gordon et al, 2038) |
45793 |
| Brachypodium distachyon | GreenPhyl Pangenome | n/a | 61571 |
| Musa balbisiana | MUSBA_Mba1.1 | v1.1 (Wang et al, 2019) |
33021 |
| Musa acuminata | MUSAC_Macba2 | v2.0 (Rouard et al, 2018) |
32692 |
| Musa acuminata | MUSAC_Macbu1 | v1.0 (Rouard et al, 2018) |
45069 |
| Musa acuminata | MUSAC_Macma2 | v2.0 (Martin et al, 2016) |
35276 |
| Musa acuminata | MUSAC_Macze1 | v1.0 (Rouard et al, 2018) |
44702 |
| Musa acuminata | GreenPhyl Pangenome | n/a | 46270 |
| Theobroma cacao | THECC_Criollo_v2.0 | v2.0 (Argout et al, 2018) |
21330 |
| Theobroma cacao | THECC_Matina1_6_v1.1 | v1.1 (Motamayor et al, 2013) |
44607 |
| Theobroma cacao | GreenPhyl Pangenome | n/a | 25494 |
| Manihot esculenta | MANES_AM560_2_v6.1 | v6.1 (Bredeson et al, 2016) |
33033 |
| Malus domestica | MALDO_Borkh_v3.0.a1 | v3.0.a1 (Velasco et al, 2010; Li et al, 2016) |
95232 |
| Malus domestica | MALDO_GDDH13_v1.1 | v1.1 (Daccord et al, 2017) |
45116 |
| Malus domestica | MALDO_HFTH1 | vHFTH1 (Zhang et al, 2019) |
44677 |
| Malus domestica | GreenPhyl Pangenome | n/a | 55576 |
| Cucumis sativus | CUCSA_ASM407_v2.0 | v2.0 (Huang et al, 2009) |
23780 |
| Cucumis sativus | CUCSA_Gy14_v2.0 | v2.0 (unpublished) |
22324 |
| Cucumis sativus | CUCSA_PI183967 | vPI183967 (Qi et al, 2013) |
22935 |
| Cucumis sativus | GreenPhyl Pangenome | n/a | 23556 |
| Cajanus cajan | CAJCA_Asha_v1.0 | v1.0 (Varshney et al, 2012) |
40071 |
| Hordeum vulgare | HORVU_IBSC_v2.0 | v2.0 (IBGC, 2012) |
37705 |
| Phaseolus vulgaris | PHAVU_v2.0 | v2.0 (Schmutz et al. 2014) |
27433 |
| Citrus sinensis | CITSI_v2.0 | v2.0 (Xu et al, 2013) |
29406 |
| Solanum tuberosum | SOLTU_PGSC_v4.03 | v4.03 (PGSC) |
39031 |
| Amborella trichopoda | AMBTC_v1.0 | v1.0 (Albert et al, 2013) |
26846 |
| Elaeis guineensis | ELAGV_RefSeq_v1.0 | v1.0 (Singh et al, 2013) |
41887 |
| Cicer arietinum | CICAR_CDC_Frontier_kabuli | vKabuli (Varshney et al, 2013) |
28269 |
| Cicer arietinum | CICAR_ICC_4958_desi | vDesi (Parween et al, 2015) |
30257 |
| Cicer arietinum | GreenPhyl Pangenome | n/a | 25097 |
| Coffea canephora | COFCA_v1.0 | v1.0 (Denoeud et al, 2014) |
25574 |
| Citrus maxima | CITMA_v1.0 | v1.0 (Wang et al, 2017) |
30123 |
| Cucumis melo | CUCME_DHL92_v3.6.1 | v3.6.1 (Garcia-Mas et al. 2012) |
29980 |
| Coffea arabica | COFAR_RB_v1.0 | v1.0 (unpublished) |
78311 |
| Brassica napus | BRANA_Darmor_v8.1 | v8.1 (Bayer et al. (2017)) |
80382 |
| Brassica napus | BRANA_Tapidor_v6.3 | v6.3 (Bayer et al. (2017)) |
70162 |
| Brassica napus | BRANA_v5.0 | v5.0 (Chalhoub et al. 2014. Science) |
101040 |
| Brassica napus | GreenPhyl Pangenome | n/a | 78083 |
| Daucus carota | DAUCA_JGI_v2.0 | v2.0 (Iorizzo et al, 2016) |
32118 |
| Ipomoea trifida | IPOTF_NSP306 | vNSP306 (Wu et al, 2018) |
32301 |
| Ipomoea trifida | IPOTF_Y22 | vY22 (Li et al, 2019) |
30227 |
| Ipomoea trifida | GreenPhyl Pangenome | n/a | 31420 |
| Fragaria vesca | FRAVE_v4.0a1 | v4.0a1 (Shulaev et al, 2011) |
28588 |
| Cocos nucifera | COCNU_C3B02_v2.0 | v2.0 |
52931 |
| Cocos nucifera | COCNU_CATD | vCatigan Green Dwarf (Lantican et al, 2019) |
34953 |
| Cocos nucifera | GreenPhyl Pangenome | n/a | 35995 |
| Capsicum annuum | CAPAN_CM334_v2.0 | v2.0 (Kim et al, 2014) |
35884 |
| Capsicum annuum | CAPAN_Glabriusculum_Chiltepin_v2.0 | v2.0 (Qin et al, 2014) |
34476 |
| Capsicum annuum | CAPAN_Zunla_1_v2.0 | v2.0 (Qin et al, 2014) |
35336 |
| Capsicum annuum | GreenPhyl Pangenome | n/a | 42020 |
| Phoenix dactylifera | PHODC_v3.0 | v3.0 (Al-Mssallem et al, 2013) |
40634 |
| Oryza glaberrima | ORYGL_v1.0 | v1.0 (Wang et al, 2014 ;stein et al, 2018) |
33164 |
| Olea europaea | OLEEU_v1.0 | v1.0 (Unver et al, 2017) |
50684 |
| Ipomoea triloba | IPOTR_NSP323 | vNSP323 (Wu et al, 2018) |
31426 |
| Beta vulgaris | BETVU_RefBeet_v1.2 | v1.2 (Minoche et al. 2015) |
29088 |
| Glycine max | SOYBN_Wm82_a2_v1.0 | v1.0 (Schmutz et al, 2010) |
54175 |
| Glycine max | SOYBN_ZH13 | vZH13 (Shen et al, 2018) |
52130 |
| Glycine max | GreenPhyl Pangenome | n/a | 45272 |
| Solanum lycopersicum | SOLLC_ITAG3.2 | v3.2 |
34727 |
| Helianthus annuus | HELAN_XRQ_v1.2 | v1.2 (Badouin et al, 2017) |
52243 |
| Chenopodium quinoa | CHEQI_JGI_v1.0 | v1.0 (Jarvis et al, 2017) |
44776 |
| Citrus medica | CITME_v1.0 | v1.0 (Wang et al, 2017) |
46851 |
| Brassica oleracea | BRAOL_A2_v1.0 | v1.0 (Liu et al. (2014)) |
35400 |
| Brassica oleracea | BRAOL_HDEM | vHDEM (Belsner et al, 2018) |
61279 |
| Brassica oleracea | BRAOL_TO1000 | vTO1000 (Parkin et al. (2014) ) |
56687 |
| Brassica oleracea | GreenPhyl Pangenome | n/a | 61301 |
| Triticum turgidum | TRITU_Svevo_v2.0 | v2.0 (Maccaferri et al, 2019) |
67182 |
| Triticum turgidum | TRITU_Zavitan_v1.1 | v1.1 (IWGSC) |
107891 |
| Triticum turgidum | GreenPhyl Pangenome | n/a | 54802 |
| Zea mays | MAIZE_B73_v4.0 | v4.0 (Schnable et al, 2009?) |
39591 |
| Zea mays | MAIZE_CML247_v1.0 | v1.0 (Lu et al, 2015) |
36509 |
| Zea mays | MAIZE_Mo17_v1.0 | v1.0 (Yang et al, 2017) |
40003 |
| Zea mays | MAIZE_PH207_v1.0 | v1.0 (Hirsch et al, 2016) |
40557 |
| Zea mays | GreenPhyl Pangenome | n/a | 45785 |
| Saccharum spontaneum | SACSP_AP85_441_v1.0 | v1.0 (Zhang et al, 2018) |
83826 |
| Brassica rapa subsp. rapa | BRARR_Z1 | vZ1 (Belsner et al, 2018) |
46721 |
| Brassica rapa subsp. rapa | BRARR_v3.0 | v3.0 (Wang et al. (2011); Zhang et al,2018) |
46250 |
| Brassica rapa subsp. rapa | GreenPhyl Pangenome | n/a | 50270 |
| Dioscorea rotundata | DIORT_TDr96_F1_v1.0 | v1.0 (Tamiru et al, 2017) |
26198 |
Sequence identifiers
Sequences are uniquely identifed by a the locus tags defined by the consortia responsible of the annotation (e.g. At5g20240.1). Only sequences with of the pangenes are greated by us and start with the | Organism | Example of sequence identifiers |
|---|---|
| Oryza sativa | OsIR8_01T0061400, OsKitaake01g052900.1, OsMH_01T0090500, A2J10_01T0036900, LOC_Os01g07170.1, OsR498G0100441000.01.T02, OsZS_01T0041800, orysa_pan_p000258 |
| Arabidopsis thaliana | AT1G06650.2 |
| Medicago truncatula | MtrunA17_Chr7g0232191, Medtr0100s0070.1, medtr_pan_p000676 |
| Sorghum bicolor | Sobic.001G054500.2, 3381.casb001g002020.635.1, sorbi_pan_p000381 |
| Vitis vinifera | Vitvi07g02734.t01, VvCabSauv08_H0000F_025.ver1.0.g002900.m01, VvCarFPS02VCR702_v1_Hc0000F_087.ver1_0.g412680.m01, vitvi_pan_p000751 |
| Brachypodium distachyon | Brdisv1ABR21027235m_1, Brdisv1ABR31031864m_1, Brdisv1ABR41029504m_1, Brdisv1ABR51027422m_1, Brdisv1ABR6_r1029111m_1, Brdisv1ABR71027460m_1, Brdisv1ABR81038192m_1, Brdisv1ABR9_r1021141m_1, Brdisv1Adi-101017245m_1, Brdisv1Adi-121023003m_1, Brdisv1Adi-21027019m_1, Brdisv1Arn11029109m_1, Brdisv1Bd18-11030198m_1, Brdisv1Bd1-11022258m_1, Brdisv1Bd21-3_r1026208m_1, Bradi2g40632.3_1, Brdisv1Bd29-11023618m_1, Brdisv1Bd2-31025694m_1, Brdisv1Bd30-11028846m_1, Brdisv1Bd3-1_r1019427m_1, Brdisv1BdTR10C1025743m_1, Brdisv1BdTR11A1023650m_1, Brdisv1BdTR11G1026921m_1, Brdisv1BdTR11I1029292m_1, Brdisv1BdTR12c1025182m_1, Brdisv1BdTR13a1024669m_1, Brdisv1BdTR13C1025325m_1, Brdisv1BdTR1i1033329m_1, Brdisv1BdTR2B1025953m_1, Brdisv1BdTR2G1022395m_1, Brdisv1BdTR3C1028019m_1, Brdisv1BdTR5I1025651m_1, Brdisv1BdTR7a1028277m_1, Brdisv1BdTR8i1030710m_1, Brdisv1BdTR9K1021934m_1, Brdisv1Bis-11028220m_1, Brdisv1Foz11026031m_1, Brdisv1Gaz-81013352m_1, Brdisv1Jer11023936m_1, Brdisv1Kah-11022341m_1, Brdisv1Kah-51029729m_1, Brdisv1Koz-11030704m_1, Brdisv1Koz-31028005m_1, Brdisv1Luc11033646m_1, Brdisv1Mig31026331m_1, Brdisv1Mon31026765m_1, Brdisv1Mur11021687m_1, Brdisv1Per11025508m_1, Brdisv1RON21032499m_1, Brdisv1S8iiC1029031m_1, Brdisv1Sig21026101m_1, Brdisv1Tek-21025019m_1, Brdisv1Tek-41013519m_1, Brdisv1Uni21028125m_1, bradi_pan_p000147 |
| Musa balbisiana | Mba00_g04290.1 |
| Musa acuminata | Maban_Contig1017_t000280, Mabur_Contig10341_t000010, Ma01_t01310.1, Mazeb_scaffold10599_t000010, musac_pan_p000625 |
| Theobroma cacao | Tc01v2_t004390.1, Thecc1EG040671t1, thecc_pan_p000455 |
| Manihot esculenta | Manes.01G036200.1 |
| Malus domestica | MDP0000391902, MD00G1014800, HF10298-RA, maldo_pan_p000782 |
| Cucumis sativus | KGN43854, CsGy1G004310.1, evm.model.Chr1.1812, cucsa_pan_p000308 |
| Cajanus cajan | cajca.ICPL87119.gnm1.ann1.C.cajan_00084.1 |
| Hordeum vulgare | HORVU0Hr1G007000.1 |
| Phaseolus vulgaris | phavu.G19833.gnm2.ann1.Phvul.001G088400.1 |
| Citrus sinensis | Cs1g07360.1 |
| Solanum tuberosum | PGSC0003DMP400065024 |
| Amborella trichopoda | evm_27.model.AmTr_v1.0_scaffold00002.580 |
| Elaeis guineensis | XP_010904776.1 |
| Cicer arietinum | cicar.CDCFrontier.gnm1.ann1.Ca_00752.1, cicar.ICC4958.gnm2.ann1.Ca_00634.1, cicar_pan_p000434 |
| Coffea canephora | Cc01_g02450 |
| Citrus maxima | Cg1g003530.1 |
| Cucumis melo | MELO3C001960.2.1 |
| Coffea arabica | Ca_10_49.4 |
| Brassica napus | BnaA01g04770.1D2, BnaA01g09660.1T, GSBRNA2T00000367001, brana_pan_p000822 |
| Daucus carota | DCAR_000791 |
| Ipomoea trifida | itf00g30010.t1, Itr.Sc0000019.83, ipotf_pan_p000407 |
| Fragaria vesca | FvH4_1g00710.1 |
| Cocos nucifera | COCNU_HT001RO02_01PF07760.1, Cnu_15972-RA, cocnu_pan_p000117 |
| Capsicum annuum | CA.PGAv.1.6.scaffold1010.17, Capang01g001860, Capana00g000628, capan_pan_p000414 |
| Phoenix dactylifera | XP_008775060.1 |
| Oryza glaberrima | ORGLA01G0081200.1 |
| Olea europaea | Oeu001077.2 |
| Ipomoea triloba | itb01g07730.t1 |
| Beta vulgaris | Bv1_001030_strk.t1 |
| Glycine max | Glyma01g02110.2, SoyZH13_01G081200.m1, soybn_pan_p000426 |
| Solanum lycopersicum | Solyc00g066350.1.1 |
| Helianthus annuus | HanXRQChr00c0504g0575291 |
| Chenopodium quinoa | AUR62000009-RA |
| Citrus medica | Cm006890.2 |
| Brassica oleracea | Bol004369, BolC1p01817H, NC_027748.1_cds_XP_013592028.1_2167, braol_pan_p000173 |
| Triticum turgidum | TRIDC1Av2G009770.1, TraesCS1A02G037000.1, tritu_pan_p000946 |
| Zea mays | ZeamMp028, Zm00006a000307, ZmMO1701t000141, Zm00008a027876_T01, maize_pan_p000616 |
| Saccharum spontaneum | Sspon.01G0005010-1A |
| Brassica rapa subsp. rapa | BraSC224t45811Z, BraA01g009470.3C, brarr_pan_p000957 |
| Dioscorea rotundata | Dr00399 |
Data associated to genomes
Protein domain: Each sequence was analysed using InterProScan to identify InterPro domain (release ).
UniProt: Correspondance between UniProtKB-Swissprot ( last updated: January 2020) was made based on the ordered locus when available (in 'Gene names' section). Otherwise, mapping was done by using blast with UniProtKB-Swissprot against a specific whole genome. We transfered UniProtKB-Swissprot for the first hit with an identity score > 90%.
Gene Ontology (GO): GO terms were obtained from the interpro (InterPro to GO mapping version: 2019/09/07 14:18:45) and UniProt (UniProt to GO mapping version: n/a).
Pubmed: Gene families were mapped by selected pubmed id referenced in UniProt entries. GreenPhyl Curators can also add additional publications manually.