Download GreenPhyl v5 datasets
- Species (species and pangenome species proteins as FASTA files)
- AMBTC_v1.0.faa
- ARATH_Araport11.faa
- BETVU_RefBeet_v1.2.faa
- BRADI_pan.faa
- BRANA_pan.faa
- BRAOL_pan.faa
- BRARR_pan.faa
- CAJCA_Asha_v1.0.faa
- CAPAN_pan.faa
- CHEQI_JGI_v1.0.faa
- CICAR_pan.faa
- CITMA_v1.0.faa
- CITME_v1.0.faa
- CITSI_v2.0.faa
- COCNU_pan.faa
- COFAR_RB_v1.0.faa
- COFCA_v1.0.faa
- CUCME_DHL92_v3.6.1.faa
- CUCSA_pan.faa
- DAUCA_JGI_v2.0.faa
- DIORT_TDr96_F1_v1.0.faa
- ELAGV_RefSeq_v1.0.faa
- FRAVE_v4.0a1.faa
- HELAN_XRQ_v1.2.faa
- HORVU_IBSC_v2.0.faa
- IPOTF_pan.faa
- IPOTR_NSP323.faa
- MAIZE_pan.faa
- MALDO_pan.faa
- MANES_AM560_2_v6.1.faa
- MEDTR_pan.faa
- MUSAC_pan.faa
- MUSBA_Mba1.1.faa
- OLEEU_v1.0.faa
- ORYGL_v1.0.faa
- ORYSA_pan.faa
- PHAVU_v2.0.faa
- PHODC_v3.0.faa
- SACSP_AP85_441_v1.0.faa
- SOLLC_ITAG3.2.faa
- SOLTU_PGSC_v4.03.faa
- SORBI_pan.faa
- SOYBN_pan.faa
- THECC_pan.faa
- TRITU_pan.faa
- VITVI_pan.faa
- MCL (MCL computation files)
- matrix_I12_level1.txt
- MCL matrix for level 1 clusters.
- matrix_I20_level2.txt
- MCL matrix for level 2 clusters.
- matrix_I30_level3.txt
- MCL matrix for level 3 clusters.
- matrix_I50_level4.txt
- MCL matrix for level 4 clusters.
- mcl_level1.txt
- MCL clusters for level 1.
- mcl_level2.txt
- MCL clusters for level 2.
- mcl_level3.txt
- MCL clusters for level 3.
- mcl_level4.txt
- MCL clusters for level 4.
- Pangenomes (pangenome computation files)
- BRADI_clusters.txt
- List of genome sequences behind each pan-sequence.
- BRADI_orphans_real.faa
- Genome unmatched sequences.
- BRADI_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- BRADI_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- BRANA_clusters.txt
- List of genome sequences behind each pan-sequence.
- BRANA_orphans_real.faa
- Genome unmatched sequences.
- BRANA_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- BRANA_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- BRAOL_clusters.txt
- List of genome sequences behind each pan-sequence.
- BRAOL_orphans_real.faa
- Genome unmatched sequences.
- BRAOL_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- BRAOL_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- BRARR_clusters.txt
- List of genome sequences behind each pan-sequence.
- BRARR_orphans_real.faa
- Genome unmatched sequences.
- BRARR_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- BRARR_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- CAPAN_clusters.txt
- List of genome sequences behind each pan-sequence.
- CAPAN_orphans_real.faa
- Genome unmatched sequences.
- CAPAN_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- CAPAN_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- CICAR_clusters.txt
- List of genome sequences behind each pan-sequence.
- CICAR_orphans_real.faa
- Genome unmatched sequences.
- CICAR_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- CICAR_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- COCNU_clusters.txt
- List of genome sequences behind each pan-sequence.
- COCNU_orphans_real.faa
- Genome unmatched sequences.
- COCNU_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- COCNU_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- CUCSA_clusters.txt
- List of genome sequences behind each pan-sequence.
- CUCSA_orphans_real.faa
- Genome unmatched sequences.
- CUCSA_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- CUCSA_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- IPOTF_clusters.txt
- List of genome sequences behind each pan-sequence.
- IPOTF_orphans_real.faa
- Genome unmatched sequences.
- IPOTF_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- IPOTF_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- MAIZE_clusters.txt
- List of genome sequences behind each pan-sequence.
- MAIZE_orphans_real.faa
- Genome unmatched sequences.
- MAIZE_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- MAIZE_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- MALDO_clusters.txt
- List of genome sequences behind each pan-sequence.
- MALDO_orphans_real.faa
- Genome unmatched sequences.
- MALDO_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- MALDO_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- MEDTR_clusters.txt
- List of genome sequences behind each pan-sequence.
- MEDTR_orphans_real.faa
- Genome unmatched sequences.
- MEDTR_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- MEDTR_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- MUSAC_clusters.txt
- List of genome sequences behind each pan-sequence.
- MUSAC_orphans_real.faa
- Genome unmatched sequences.
- MUSAC_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- MUSAC_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- ORYSA_clusters.txt
- List of genome sequences behind each pan-sequence.
- ORYSA_orphans_real.faa
- Genome unmatched sequences.
- ORYSA_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- ORYSA_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- SORBI_clusters.txt
- List of genome sequences behind each pan-sequence.
- SORBI_orphans_real.faa
- Genome unmatched sequences.
- SORBI_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- SORBI_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- SOYBN_clusters.txt
- List of genome sequences behind each pan-sequence.
- SOYBN_orphans_real.faa
- Genome unmatched sequences.
- SOYBN_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- SOYBN_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- THECC_clusters.txt
- List of genome sequences behind each pan-sequence.
- THECC_orphans_real.faa
- Genome unmatched sequences.
- THECC_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- THECC_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- TRITU_clusters.txt
- List of genome sequences behind each pan-sequence.
- TRITU_orphans_real.faa
- Genome unmatched sequences.
- TRITU_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- TRITU_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- VITVI_clusters.txt
- List of genome sequences behind each pan-sequence.
- VITVI_orphans_real.faa
- Genome unmatched sequences.
- VITVI_representative.txt
- List of genome sequences selected as representative for other associated sequences in the same genome.
- VITVI_seq_map.txt
- Genome sequence mapping sequence -> [representative ->] consensus pan-sequence.
- Get_homologues-est (get_homologues-est computation files archives)
- BRADI_est_homologues.tbz
- Get_homologues-EST computation files.
- BRANA_est_homologues.tbz
- Get_homologues-EST computation files.
- BRAOL_est_homologues.tbz
- Get_homologues-EST computation files.
- BRARR_est_homologues.tbz
- Get_homologues-EST computation files.
- CAPAN_est_homologues.tbz
- Get_homologues-EST computation files.
- CICAR_est_homologues.tbz
- Get_homologues-EST computation files.
- COCNU_est_homologues.tbz
- Get_homologues-EST computation files.
- CUCSA_est_homologues.tbz
- Get_homologues-EST computation files.
- IPOTF_est_homologues.tbz
- Get_homologues-EST computation files.
- MAIZE_est_homologues.tbz
- Get_homologues-EST computation files.
- MALDO_est_homologues.tbz
- Get_homologues-EST computation files.
- MEDTR_est_homologues.tbz
- Get_homologues-EST computation files.
- MUSAC_est_homologues.tbz
- Get_homologues-EST computation files.
- ORYSA_est_homologues.tbz
- Get_homologues-EST computation files.
- SORBI_est_homologues.tbz
- Get_homologues-EST computation files.
- SOYBN_est_homologues.tbz
- Get_homologues-EST computation files.
- THECC_est_homologues.tbz
- Get_homologues-EST computation files.
- TRITU_est_homologues.tbz
- Get_homologues-EST computation files.
- VITVI_est_homologues.tbz
- Get_homologues-EST computation files.