Family GP000017


Family ID
GP000017  add to my list
Family name
AP2/EREBP transcription factor family: ERF/DREB group (partial)   suggest a name
Cross-reference(s)
PMID:
Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
20049613 PMID:
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
12609047 PMID:
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis.
9707537 PMID:
Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression.
10809011 PMID:
Arabidopsis ethylene responsive element binding factors act as transcriptional activators or repressors of GCC box mediated gene expression.
10715325 PMID:
Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant.
9756931 PMID:
A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA.
9736626 PMID:
The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.
9192694 PMID:
The APETALA2 domain is related to a novel type of DNA binding domain.
7773013 PMID:
From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants.
15319480 PMID:
AP2/ERF family transcription factors in plant abiotic stress responses.
21867785 PMID:
Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice.
21169347 PMID:
Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.
18442469 PMID:
Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera.
21171999
Comment
For an ‘almost’ complete set of ERF/DREB sequences: join family ID 17 and 15104
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
1


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 6123
Species Sequence Count
50
84
59
111
270
195
180
122
173
94
90
100
116
82
115
203
66
85
90
137
84
104
75
234
177
111
164
131
146
124
140
189
157
178
87
108
115
119
221
121
157
125
79
234
124
197




Close InterPro family
IPR Annotation Type % Occurence Specificity
Immediate early response
IPR008653 		Immediate early response Family 1 (1) Yes
Ethylene-responsive transcription factor ABI4
IPR033266 		Ethylene-responsive transcription factor ABI4 Family 1 (33) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
AP2/ERF domain
IPR001471 		AP2/ERF domain Domain 93 (5669) No
DNA-binding domain superfamily
IPR016177 		DNA-binding domain superfamily Homologous_superfamily 92 (5644) No
AP2/ERF domain superfamily
IPR036955 		AP2/ERF domain superfamily Homologous_superfamily 93 (5677) No

Close Representative InterPro domains - Consensus schema
IPR036955 IPR001471 IPR016177

Close Domain architecture
Clustering




Note: Alignment too large for online display.
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FASTA







Phylogeny tree not available.