Family GP000810


Family ID
GP000810  add to my list
Family name
BBR-BPC transcription factor family   suggest a name
Synonym(s)
GAGA binding-like family
Cross-reference(s)
PMID:
The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
12795701 PMID:
BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK.
15722463 PMID:
Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA.
12177492
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
1


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 533
Species Sequence Count
6
10
8
6
27
17
16
8
14
14
6
6
6
5
13
22
9
7
7
8
4
32
7
15
11
5
13
14
20
7
10
19
7
19
3
5
8
37
24
8
8
7
7
9
11
8




Close InterPro family
IPR Annotation Type % Occurence Specificity
GAGA-binding transcriptional activator
IPR010409 		GAGA-binding transcriptional activator Family 68 (362) Yes
Transmembrane protein 42
IPR039632 		Transmembrane protein 42 Family 6 (32) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Representative InterPro domains - Consensus schema
IPR010409

Close Domain architecture
Clustering





Download alignment file: 
FASTA







You can filter species displayed in the phylogenomic tree by checking the species you want:
Species

Download tree file: 
XMLNewick





for (default: all):
Species


(click on the button above to get your homolog prediction list)