Family GP000637


Family ID
GP000637  add to my list
Family name
Autophagy Protein Family   suggest a name
Synonym(s)
Light chain 3 (LC3)
Cross-reference(s)
PMID:
Arabidopsis homologues of the autophagy protein Atg8 are a novel family of microtubule binding proteins.
15178341 PMID:
The autophagy-associated Atg8 gene family operates both under favourable growth conditions and under starvation stresses in Arabidopsis plants.
16157655
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
1


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 455
Species Sequence Count
3
9
7
4
29
18
15
6
6
8
8
7
18
7
6
15
5
12
6
7
4
14
7
11
9
3
10
7
40
9
9
14
11
7
5
9
6
18
22
7
7
4
5
6
10
5




Close InterPro family
IPR Annotation Type % Occurence Specificity
Autophagy protein Atg8 ubiquitin-like
IPR004241 		Autophagy protein Atg8 ubiquitin-like Family 97 (442) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ubiquitin-like domain superfamily
IPR029071 		Ubiquitin-like domain superfamily Homologous_superfamily 98 (445) No

Close Representative InterPro domains - Consensus schema
IPR029071 IPR004241

Close Domain architecture
Clustering





Download alignment file: 
FASTA







You can filter species displayed in the phylogenomic tree by checking the species you want:
Species

Download tree file: 
XMLNewick





for (default: all):
Species


(click on the button above to get your homolog prediction list)