Family GP000726


Family ID
GP000726  add to my list
Family name
RNA polymerase sigma factor, plastid SigB/SigC/SigD types family   suggest a name
Synonym(s)
Sigma70-like transcription factor
Cross-reference(s)
PMID:
Plastidic RNA polymerase sigma factors in Arabidopsis.
10555304
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
1


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 447
Species Sequence Count
8
5
7
13
16
12
10
7
9
10
10
6
18
6
8
22
7
5
6
8
5
17
6
13
10
8
9
9
15
8
8
17
8
11
6
6
9
12
21
8
9
8
5
8
7
11




Close InterPro family
IPR Annotation Type % Occurence Specificity
RNA polymerase sigma factor RpoS
IPR012761 		RNA polymerase sigma factor RpoS Family 1 (3) Yes
RNA polymerase sigma factor RpoD
IPR028630 		RNA polymerase sigma factor RpoD Family 1 (3) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
RNA polymerase sigma-70
IPR000943 		RNA polymerase sigma-70 Domain 88 (393) No
RNA polymerase sigma-70 region 3
IPR007624 		RNA polymerase sigma-70 region 3 Domain 82 (365) No
RNA polymerase sigma-70 region 2
IPR007627 		RNA polymerase sigma-70 region 2 Domain 88 (393) No
RNA polymerase sigma-70 region 4
IPR007630 		RNA polymerase sigma-70 region 4 Domain 87 (388) No
RNA polymerase sigma factor, region 3/4-like
IPR013324 		RNA polymerase sigma factor, region 3/4-like Homologous_superfamily 89 (399) No
RNA polymerase sigma factor, region 2
IPR013325 		RNA polymerase sigma factor, region 2 Homologous_superfamily 91 (408) No
RNA polymerase sigma-70 like domain
IPR014284 		RNA polymerase sigma-70 like domain Domain 89 (396) No
Winged helix-like DNA-binding domain superfamily
IPR036388 		Winged helix-like DNA-binding domain superfamily Homologous_superfamily 90 (401) No

Close Representative InterPro domains - Consensus schema
IPR036388 IPR014284 IPR000943 IPR013324 IPR007630 IPR007624 IPR007627 IPR013325

Close Domain architecture
Clustering





Download alignment file: 
FASTA







You can filter species displayed in the phylogenomic tree by checking the species you want:
Species

Download tree file: 
XMLNewick





for (default: all):
Species


(click on the button above to get your homolog prediction list)