Family GP000892


Family ID
GP000892  add to my list
Family name
Rela-spot homolog family   suggest a name
Cross-reference(s)
PMID:
A RelA-SpoT homolog (Cr-RSH) identified in Chlamydomonas reinhardtii generates stringent factor in vivo and localizes to chloroplasts in vitro.
12434003 PMID:
Conformational antagonism between opposing active sites in a bifunctional RelA/SpoT homolog modulates (p)ppGpp metabolism during the stringent response [corrected].
15066282
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
1


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 345
Species Sequence Count
4
4
4
10
10
6
5
4
4
9
5
4
10
4
8
20
5
6
7
7
6
10
5
6
7
7
5
4
5
6
4
9
6
8
9
9
4
11
31
5
5
7
4
11
5
20




Close InterPro family
IPR Annotation Type % Occurence Specificity
DNA-directed RNA polymerase, omega subunit
IPR003716 		DNA-directed RNA polymerase, omega subunit Family 1 (1) Yes
RelA/SpoT family
IPR004811 		RelA/SpoT family Family 1 (4) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
HD/PDEase domain
IPR003607 		HD/PDEase domain Domain 77 (264) No
RelA/SpoT
IPR007685 		RelA/SpoT Domain 84 (290) No

Close Representative InterPro domains - Consensus schema
IPR003607 IPR007685

Close Domain architecture
Clustering





Download alignment file: 
FASTA







You can filter species displayed in the phylogenomic tree by checking the species you want:
Species

Download tree file: 
XMLNewick





for (default: all):
Species


(click on the button above to get your homolog prediction list)