Family GP001047


Family ID
GP001047  add to my list
Family name
U2 auxiliary factor small subunit family   suggest a name
Synonym(s)
Splicing factor U2af small subunit
Cross-reference(s)
PMID:
Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
9852132 PMID:
Molecular characterization and phylogeny of U2AF35 homologs in plants.
16407443
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
1


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 328
Species Sequence Count
5
4
11
16
21
12
6
4
4
9
5
13
8
14
7
13
9
4
4
4
2
10
4
7
7
5
6
7
16
5
4
5
6
7
4
4
5
16
6
3
6
5
4
4
4
3




Close InterPro family
IPR Annotation Type % Occurence Specificity
U2 auxiliary factor small subunit
IPR009145 		U2 auxiliary factor small subunit Family 89 (292) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
RNA recognition motif domain
IPR000504 		RNA recognition motif domain Domain 74 (243) No
Zinc finger, CCCH-type
IPR000571 		Zinc finger, CCCH-type Domain 83 (273) No
RNA recognition motif domain, eukaryote
IPR003954 		RNA recognition motif domain, eukaryote Domain 68 (223) No
Nucleotide-binding alpha-beta plait domain superfamily
IPR012677 		Nucleotide-binding alpha-beta plait domain superfamily Homologous_superfamily 80 (263) No
RNA-binding domain superfamily
IPR035979 		RNA-binding domain superfamily Homologous_superfamily 78 (256) No

Close Representative InterPro domains - Consensus schema
IPR035979 IPR000504 IPR012677 IPR003954 IPR000571 IPR009145

Close Domain architecture
Clustering





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