Family GP002966


Family ID
GP002966  add to my list
Family name
Cdk-activating kinase assembly factor, mat1 family   suggest a name
Cross-reference(s)
PMID:
Molecular structure of human TFIIH.
11007478 PMID:
T-loop phosphorylation stabilizes the CDK7-cyclin H-MAT1 complex in vivo and regulates its CTD kinase activity.
11447116 PMID:
Solution structure of the N-terminal domain of the human TFIIH MAT1 subunit: new insights into the RING finger family.
11056162 PMID:
Alternative mechanisms of CAK assembly require an assembly factor or an activating kinase.
7553872
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
1


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 186
Species Sequence Count
2
2
2
9
4
3
3
4
4
4
2
3
10
2
3
10
2
2
2
3
5
6
2
4
5
2
3
3
22
2
2
4
2
3
2
3
2
5
9
2
2
2
3
2
6
7




Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycerol-3-phosphate acyltransferase, PlsY
IPR003811 		Glycerol-3-phosphate acyltransferase, PlsY Family 1 (1) Yes
Cdk-activating kinase assembly factor MAT1/Tfb3
IPR004575 		Cdk-activating kinase assembly factor MAT1/Tfb3 Family 22 (41) Yes
Outer membrane porin, bacterial
IPR005318 		Outer membrane porin, bacterial Family 1 (1) Yes
Urease
IPR008221 		Urease Family 22 (40) Yes
Urease, gamma subunit
IPR012010 		Urease, gamma subunit Family 1 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Representative InterPro domains - Consensus schema


Close Domain architecture
Clustering





Download alignment file: 
FASTA







You can filter species displayed in the phylogenomic tree by checking the species you want:
Species

Download tree file: 
XMLNewick





for (default: all):
Species


(click on the button above to get your homolog prediction list)