Family GP015181


Family ID
GP015181  add to my list
Family name
Glycoside Hydrolase family 28 subfamily 1   suggest a name
Synonym(s)
Polygalacturonase
Cross-reference(s)
PMID:
Patterns of expansion and expression divergence in the plant polygalacturonase gene family.
17010199 PMID:
Characterization of a multigene family encoding an exopolygalacturonase in maize.
8433375 PMID:
Sequence analysis of three members of the maize polygalacturonase gene family expressed during pollen development.
1391780 PMID:
Molecular characterization of one of the maize polygalacturonase gene family members which are expressed during late pollen development.
8106080 PMID:
Differential expression of a polygalacturonase gene family in Arabidopsis thaliana.
10485285
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
2


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 2380
Species Sequence Count
47
52
39
33
96
81
78
47
44
60
46
28
61
53
33
99
41
71
58
51
18
36
49
60
63
28
45
65
63
124
65
57
43
61
28
27
45
31
70
43
43
26
33
51
56
32




Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycoside hydrolase, family 28
IPR000743 		Glycoside hydrolase, family 28 Family 96 (2294) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Parallel beta-helix repeat
IPR006626 		Parallel beta-helix repeat Repeat 72 (1713) No
Pectin lyase fold/virulence factor
IPR011050 		Pectin lyase fold/virulence factor Homologous_superfamily 99 (2364) No
Pectin lyase fold
IPR012334 		Pectin lyase fold Homologous_superfamily 95 (2256) No

Close Representative InterPro domains - Consensus schema
IPR012334 IPR011050 IPR000743 IPR006626

Close Domain architecture
Clustering




Alignment available at level 1 family ( GP000087 ).





Phylogeny tree available at level 1 family ( GP000087 ).