Family GP040241


Family ID
GP040241  add to my list
Family name
Carotenoid double bound cleavage dioxygenase   suggest a name
Synonym(s)
CCD
Cross-reference(s)
PMID:
Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.
12834401
Comment
includes 9-cis-epoxycarotenoid dioxygenase (NCED) and some other CCD with no plastid targeting transit peptide (AtCCD1 type)
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
3


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 353
Species Sequence Count
5
6
4
5
13
11
11
3
9
10
4
7
10
8
5
7
3
5
5
9
3
4
4
6
9
5
8
7
20
7
5
9
8
10
5
10
3
4
12
5
8
7
12
6
14
22




Close InterPro family
IPR Annotation Type % Occurence Specificity
Carotenoid oxygenase
IPR004294 		Carotenoid oxygenase Family 97 (341) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Representative InterPro domains - Consensus schema
IPR004294

Close Domain architecture
Clustering




Alignment available at level 1 family (
Carotenoid dioxygenase
GP000379 ).





Phylogeny tree available at level 1 family ( GP000379 ).