Family GP069973


Family ID
GP069973  add to my list
Family name
9-cis-epoxycarotenoid dioxygenase   suggest a name
Synonym(s)
NCED
Cross-reference(s)
PMID:
Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.
12834401
Comment
Chloroplastic, no intron in Arabidopsis. 11, 12 9-cis cleavage activity found for Arabidopsis sequences, except for At4g19170
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
4


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 289
Species Sequence Count
4
6
4
4
13
11
10
2
6
9
4
5
6
5
4
5
3
4
4
9
3
3
3
6
6
4
8
7
13
6
5
8
8
10
3
6
3
3
9
4
6
4
10
5
10
18




Close InterPro family
IPR Annotation Type % Occurence Specificity
Carotenoid oxygenase
IPR004294 		Carotenoid oxygenase Family 98 (283) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Representative InterPro domains - Consensus schema
IPR004294

Close Domain architecture
Clustering




Alignment available at level 1 family (
Carotenoid dioxygenase
GP000379 ).





Phylogeny tree available at level 1 family ( GP000379 ).