Family GP018478


Family ID
GP018478  add to my list
Family name
Rna polymerase rpb6 family   suggest a name
Synonym(s)
DNA-directed RNA Polymerase
Cross-reference(s)
PMID:
Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly.
11158566
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
2


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 103
Species Sequence Count
1
2
1
4
3
2
2
2
1
2
1
1
2
1
3
5
2
2
2
3
1
3
1
1
2
1
1
2
5
2
3
2
2
5
4
5
2
2
8
1
1
2
1
1
2
1




Close InterPro family
IPR Annotation Type % Occurence Specificity
RNA polymerase, subunit omega/K/RPB6
IPR006110 		RNA polymerase, subunit omega/K/RPB6 Family 87 (90) No
Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit
IPR006111 		Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit Family 85 (88) Yes
DNA-directed RNA polymerase, subunit RPB6
IPR028363 		DNA-directed RNA polymerase, subunit RPB6 Family 72 (74) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
RNA polymerase subunit, RPB6/omega
IPR012293 		RNA polymerase subunit, RPB6/omega Homologous_superfamily 95 (98) No
RPB6/omega subunit-like superfamily
IPR036161 		RPB6/omega subunit-like superfamily Homologous_superfamily 94 (97) No

Close Representative InterPro domains - Consensus schema
IPR036161 IPR006110 IPR006111 IPR012293
DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
IPR020708 IPR028363

Close Domain architecture
Clustering




Alignment available at level 1 family (
Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit
GP104623 ).





Phylogeny tree available at level 1 family ( GP104623 ).