Family GP019987


Family ID
GP019987  add to my list
Family name
Dna mismatch repair protein msh6 family   suggest a name
Synonym(s)
DNA mismatch repair protein MutS, type 1
Cross-reference(s)
PMID:
DNA mismatch repair in plants. An Arabidopsis thaliana gene that predicts a protein belonging to the MSH2 subfamily of eukaryotic MutS homologs.
9342879 PMID:
Four mismatch repair paralogues coexist in Arabidopsis thaliana: AtMSH2, AtMSH3, AtMSH6-1 and AtMSH6-2.
10517319 PMID:
Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA.
10852942
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
2


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 88
Species Sequence Count
1
1
3
1
2
1
2
1
1
3
1
1
6
1
1
6
1
2
1
1
7
1
1
2
5
1
1
1
1
1
5
2
1
1
2
2
1
2
5
2
1
1
1
1
3




Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DNA mismatch repair protein MutS, C-terminal
IPR000432 		DNA mismatch repair protein MutS, C-terminal Domain 73 (64) No

Close Representative InterPro domains - Consensus schema
P-loop containing nucleoside triphosphate hydrolase
IPR027417
DNA mismatch repair protein MutS, core
IPR007696 IPR000432
DNA mismatch repair protein MutS, core domain superfamily
IPR036187

Close Domain architecture
Clustering




Alignment available at level 1 family (
Muts/msh superfamily
GP000203 ).





Phylogeny tree available at level 1 family ( GP000203 ).