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Family GP001327


Family ID GP001327  add to my list RDF
Family name Unannotated cluster  
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
(plant-specificity: 40%)
GP001327 (514)
2
K Homology with Zinc finger C3H domain containg family
GP016745 (151) ,
Zinc finger CCCH domain-containing family
GP017179 (126) ,
Zinc finger CCCH domain-containing family
GP017768 (107) , GP019827 (91) ,
(plant-specificity: 60%)
GP022142 (38) ,
(plant-specificity: 60%)
GP024004 (29) , GP031142 (3)
3 GP041377 (151) , GP041837 (124) , GP042455 (104) , GP044748 (91) ,
(plant-specificity: 60%)
GP047314 (36) ,
(plant-specificity: 60%)
GP049611 (29) , GP127943 (3) , GP058865 (3)
4 GP070764 (151) , GP071360 (124) , GP074344 (91) , GP071895 (66) ,
(plant-specificity: 33%)
GP132637 (38) ,
(plant-specificity: 50%)
GP133591 (16) ,
(plant-specificity: 41%)
GP137697 (6) , GP143866 (3) , GP144145 (3) , GP091626 (3) , GP144779 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 514
Species Count (w/o splice) Count (w/ splice)
1 1
5 5
5 5
10 11
5 5
16 16
10 10
9 9
11 11
14 14
18 18
15 18
13 19
7 7
9 9
18 32
10 12
11 11
21 21
14 14
11 11
8 9
10 10
18 18
15 45
8 8
15 23
10 10
16 16
10 15
23 23
8 8
18 18
10 10
8 13
16 21
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Reduced growth phenotype protein 1
IPR014848
Reduced growth phenotype protein 1 Family 14 (74) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, CCCH-type
IPR000571
Zinc finger, CCCH-type Domain 73 (377) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000571


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
514 434 (84%) 396 (77%) [49; 312; 1176] ~337 2689 82




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Species



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