Family GP000379_V3


Family ID
Carotenoid dioxygenase [OBSOLETE]
GP000379_V3 OBSOLETE  add to my list
Family name Carotenoid dioxygenase
Creation date (last update: 2016-09-27 12:07:10)
Level 1
Type family
Owner greenphyl_v3
Evidence IEA:InterPro
Access public - read only
Family description / comments includes 9-cis epoxycarotenoid dioxygenases (NCED) and other carotenoid cleavage dioxygenases (CCD). For a complete picture of the family, merge with family 3862.
Sequences 307



(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 307
Species Sequence Count
18
16
17
16
18
8
13
16
18
5
44
9
8
17
7
5
3
7
32
10
20




Species
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Download alignment file: 
FASTA




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
307 290 (94%) 290 (94%) [60; 527; 1127] ~455 380 380




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Species

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XMLNewick


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
307 290 (94%) 290 (94%) [60; 527; 1127] ~455 380 380