Family GP042305


Family ID
GP042305  add to my list
Family name
Signal recognition particle, subunit SRP54 subfamily   suggest a name
Cross-reference(s)
PMID:
Isolation and characterization of an Arabidopsis thaliana gene for the 54 kDa subunit of the signal recognition particle.
8292790 PMID:
Arabidopsis thaliana expresses three divergent Srp54 genes.
7824644
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
3


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 170
Species Sequence Count
2
4
1
5
10
6
5
2
3
5
2
1
1
1
2
13
2
1
1
3
1
2
5
2
4
8
3
2
3
2
5
2
1
6
5
2
2
3
13
2
2
4
1
16
2
2




Close InterPro family
IPR Annotation Type % Occurence Specificity
Signal recognition particle, SRP54 subunit, eukaryotic
IPR006325 		Signal recognition particle, SRP54 subunit, eukaryotic Family 61 (104) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Signal recognition particle, SRP54 subunit, GTPase domain
IPR000897 		Signal recognition particle, SRP54 subunit, GTPase domain Domain 85 (144) No
P-loop containing nucleoside triphosphate hydrolase
IPR027417 		P-loop containing nucleoside triphosphate hydrolase Homologous_superfamily 84 (142) No
Signal recognition particle SRP54, N-terminal domain superfamily
IPR042101 		Signal recognition particle SRP54, N-terminal domain superfamily Homologous_superfamily 82 (139) No

Close Representative InterPro domains - Consensus schema
IPR027417
AAA+ ATPase domain
IPR003593
SRP/SRP receptor, N-terminal
IPR036225 IPR042101
Signal recognition particle SRP54, helical bundle
IPR013822 IPR000897
Signal recognition particle, SRP54 subunit, M-domain
IPR004125
Signal recognition particle, SRP54 subunit, M-domain superfamily
IPR036891
Signal recognition particle, SRP54 subunit
IPR022941 IPR006325

Close Domain architecture
Clustering




Alignment available at level 1 family (
Signal recognition particle 54 kda family
GP000583 ).





Phylogeny tree available at level 1 family ( GP000583 ).